Open Scholarship Bootcamp 2025

Day 1 Welcome

Rick Gilmore & Alaina Pearce

Psychology & University Libraries

Agenda

  • Introductions
  • Motivation
  • Inspiration
  • Schedule
  • A cautionary tale

Thank you

  • Nancy English & Laureen Teti
  • Child Study Center (CSC)
  • University Libraries
  • Institute for Computational & Data Sciences
  • Social Sciences Research Institute (SSRI)
  • Department of Statistics
  • Center for Social Data Analytics (SoDA)

Introductions

Bootcamp staff

Our initiative

Motivation

Begley & Ellis (2012)

…Scientists in the haematology and oncology department at the biotechnology firm Amgen…tried to confirm published findings…[from] fifty-three…‘landmark’ studies.

findings were confirmed in only 6 (11%) cases.

Even knowing the limitations of preclinical research, this was a shocking result.

Reproducibility Project: Cancer Biology

Tim Errington, Center for Open Science at the Open Science Bootcamp 2023

…The initial aim of the project was to repeat 193 experiments from 53 high-impact papers…However, the various barriers and challenges we encountered while designing and conducting the experiments meant that we were only able to repeat 50 experiments from 23 papers…

Errington, Denis, Perfito, Iorns, & Nosek (2021)

Tim Errington, Center for Open Science at the Open Science Bootcamp 2023

…the data needed to compute effect sizes and conduct power analyses was publicly accessible for just 4 of 193 experimentsnone of the 193 experiments were described in sufficient detail in the original paper to enable us to design protocols to repeat the experiments…

Errington et al. (2021)

Tim Errington, Center for Open Science at the Open Science Bootcamp 2023

…While authors were extremely or very helpful for 41% of experiments, they were minimally helpful for 9% of experiments, and not at all helpful (or did not respond to us) for 32% of experiments

Errington et al. (2021)

Tim Errington, Center for Open Science at the Open Science Bootcamp 2023

…This experience draws attention to a basic and fundamental concern about replication – it is hard to assess whether reported findings are credible.

Errington et al. (2021)

Figure 1: % of U.S. adults who said science has had a(n) ___ effect on society

Figure 2: % of U.S. adults who say…

Houtkoop et al. (2018) Figure 2

Tenopir et al. (2020)

Inspiration

Feynman (1974)

…the idea that we all hope you have learned in studying science in school…It’s a kind of scientific integrity, a principle of scientific thought that corresponds to a kind of utter honesty

Feynman (1974)

“The first principle is that you must not fool yourself—and you are the easiest person to fool. So you have to be very careful about that. After you’ve not fooled yourself, it’s easy not to fool other scientists.”

Twain (1997)

Courage is resistance to fear, mastery of fear—not absence of fear.

If you have nothing to hide, hide nothing

The alternative: Openness

  • Share data, code, materials, & protocols
    • Openly (no prior approval or mandated collaboration)
    • With explicit participant permission + formal data use agreements
  • Publish replications & null findings, complete protocols
  • Re-use and cite what others have shared
  • Prioritize getting it right

After all…

  • Scholars!
  • Scholars…
    • Gather & explore
    • Weigh & measure
    • Assess & evaluate
    • Communicate & share

Merton (1973)

  • Communalism (common ownership)
  • Universalism (independent validity)
  • Disinterestedness (public benefit)
  • Organized skepticism (scrutinize everything)

Merton (1973)

The mores of science possess a methodologic rationale…They are procedurally efficent…

https://teacherhead.com/2017/02/27/reinventing-the-wheel-again/

Schedule

Figure 3: https://penn-state-open-science.github.io/bootcamp-2025/

Themes

  • Hands-on activities
    • Quarto I and II
    • Juptyer notebooks I and II
    • Getting credit, I, II, and III
  • Policies
    • Ethics
    • Open access
  • Changing practice & culture
    • Questionable research practices
    • Early career panel

Today, Wednesday, August 13

Thursday, August 14

Friday, August 15

A cautionary tale

(NYU Health Sciences Library, 2013)

Resources

About

This talk was produced using Quarto, using the RStudio Integrated Development Environment (IDE), version 2025.5.1.513.

The source files are in R and R Markdown, then rendered to HTML using the revealJS framework. The HTML slides are hosted in a GitHub repo and served by GitHub pages: https://penn-state-open-science.github.io/bootcamp-2025-day-1-welcome/

References

Begley, C. G., & Ellis, L. M. (2012). Drug development: Raise standards for preclinical cancer research. Nature, 483, 531–533. https://doi.org/10.1038/483531a
Errington, T. M., Denis, A., Perfito, N., Iorns, E., & Nosek, B. A. (2021). Challenges for assessing replicability in preclinical cancer biology. eLife, 10, e67995. https://doi.org/10.7554/eLife.67995
Feynman, R. P. (1974). Cargo cult science. Retrieved from https://calteches.library.caltech.edu/51/2/CargoCult.htm
Houtkoop, B. L., Chambers, C., Macleod, M., Bishop, D. V. M., Nichols, T. E., & Wagenmakers, E.-J. (2018). Data sharing in psychology: A survey on barriers and preconditions. Advances in Methods and Practices in Psychological Science, 1, 70–85. https://doi.org/10.1177/2515245917751886
Merton, R. W. (1973). The normative structure of science. In R. K. Merton & N. W. Storer (Eds.), The Sociology of Science: Theoretical and Empirical Investigations (pp. 267–278). The University of Chicago Press.
NYU Health Sciences Library. (2013). Data sharing and management snafu in 3 short acts (higher quality). Youtube. Retrieved from https://www.youtube.com/watch?v=66oNv_DJuPc
Tenopir, C., Rice, N. M., Allard, S., Baird, L., Borycz, J., Christian, L., … Sandusky, R. J. (2020). Data sharing, management, use, and reuse: Practices and perceptions of scientists worldwide. PloS One, 15, e0229003. https://doi.org/10.1371/journal.pone.0229003
Twain, M. (1997). The tragedy of Pudd’nhead Wilson and the comedy of those extraordinary twins. New York, NY: Oxford University Press.